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Research > Bioinformatics / Medical Informatics

Bülent Yener

 

 

 

·         Quantification of Three-Dimensional Cell-Mediated Collagen Remodeling Using Graph Theory. Bilgin CC, Lund AW, Can A, Plopper GE, Yener B, 2010. PLoS ONE 5(9): e12783. doi:10.1371/journal.pone.0012783.

 

·         Quantification of spatial parameters in 3D cellular constructs using graph theory. Lund AW, Bilgin CC, Hasan MA, McKeen LM, Stegemann JP, Yener B, Zaki MJ, Plopper GE. J Biomed Biotechnol. 2009;2009:928286. Epub 2009 Nov 10.

 

·         The natural and engineered 3D microenvironment as a regulatory cue during stem cell fate determination. Lund AW, Yener B, Stegemann JP, Plopper GE. Tissue Eng Part B Rev. 2009 Sep;15(3):371-80.

 

·         Histopathological Image Analysis: A review. Gurcan MN, Boucheron L, Can A, Madabhushi A, Rajpoot N, Yener B, IEEE Reviews in Biomedical Engineering, vol. 2, pp 147-171, 2009.

 

·         Multiway modeling and analysis in stem cell systems biology B. Yener, E. Acar, P. Agius, K. Bennett, S. L Vandenberg,  G. E.PlopperBMC Systems Biology 2008, 2:63 (14 Jul 2008).

 

·         Proteomics Reveals Multiple Routes to the Osteogenic Phenotype in  Mesenchymal Stem Cells. with K. P. Bennett, C.  Bergeron, E.  Acar, R. F. Klees, S. L. Vandenberg,  G. E Plopper.  Biomedical Central (BMC) Genomics 2007, 8:380 (19 October 2007).

·         Unsupervised Multiway data Analysis: A Literature Survey. E. Acar, B. Yener. IEEE Transactions on Knowledge and Data Engineering, 21 (1): 6-20, 2009. This is the technical report version . RPI Technical Report TR-07-06. March 2007.

·         Multiway Analysis of Epilepsy Tensors. with E. Acar, C. Aykut-Bingol, H. Bingol. R. Bro.  in BIOINFORMATICS 23(13): i10-i18, 2007.

·         Seizure Recognition on Epilepsy Feature Tensor. with E. Acar, C. Aykut-Bingol, H. Bingol. R. Bro.  in Proc.  of  IEEE EMNBC 2007, August 2007.

·         Cell-Graph Mining for Breast Tissue Modeling and Analysis. with C. Bilgin, C. Demir, C. Nagi. in Proc. of IEEE EMBC 2007, August 2007.

·         Computational Analysis of Epileptic Focus Localization. with E. Acar, C. Bingol, H. Bingol.
in Proceedings of The Fourth IASTED International Conference on Biomedical Engineering - BioMED2006, 15-17 February 2006, Innsbruck, Austria.

·         Learning the Topological Properties of Brain Tumors. with C. Gunduz and S. H. Gultekin.
in IEEE/ACM Transactions on Computational Biology and Bioinformatics Vol2. No. 3, July-September 2005.

·         Augmented Cell-graphs for Automated Cancer Diagnosis. with C. Demir and S. H. Gultekin.
in BIOINFORMATICS Vol. 21 Suppl. 2 2005 pp 7--12. (Presented in Proc. of ECCB, October 2005).

·         Spectral Analysis of Cell-graphs for Automated Cancer Diagnosis. with C. Demir and S. H. Gultekin. in Proc. of 4th Conference on Modeling and Simulation in Biology, Medicine and Biomedical Engineering, Linkoping, Sweden, May 2005.

·         The Cell-Graphs of Cancer. with C. Gunduz and S. H. Gultekin. in BIOINFORMATICS Vol. 20 Suppl. 2004, pp 145-151 (presented in Proc. of International Symposium on Molecular Biology ISMB/ECCB, July, 2004).