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Quantification of Three-Dimensional
Cell-Mediated Collagen Remodeling Using Graph Theory.
Bilgin CC, Lund AW, Can A, Plopper GE, Yener B, 2010. PLoS ONE 5(9): e12783. doi:10.1371/journal.pone.0012783.
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Quantification
of spatial parameters in 3D cellular constructs using graph theory.
Lund AW, Bilgin CC, Hasan
MA, McKeen LM, Stegemann
JP, Yener B, Zaki
MJ, Plopper GE. J Biomed Biotechnol.
2009;2009:928286. Epub
2009 Nov 10.
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Histopathological Image Analysis: A review. Gurcan MN, Boucheron L,
Can A, Madabhushi A, Rajpoot
N, Yener B, IEEE Reviews in Biomedical
Engineering, vol. 2, pp 147-171, 2009.
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Multiway
modeling and analysis in stem cell systems biology B. Yener, E. Acar, P. Agius, K. Bennett, S. L Vandenberg, G. E.Plopper.
BMC Systems Biology
2008, 2:63 (14 Jul 2008).
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Proteomics Reveals Multiple
Routes to the Osteogenic Phenotype in Mesenchymal Stem
Cells. with K. P. Bennett, C. Bergeron, E. Acar, R. F. Klees, S. L.
Vandenberg, G. E Plopper.
Biomedical Central (BMC) Genomics 2007, 8:380
(19 October 2007).
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Unsupervised
Multiway data Analysis: A Literature Survey.
E. Acar, B. Yener. IEEE Transactions on Knowledge and Data
Engineering, 21 (1): 6-20, 2009. This is the technical
report version . RPI Technical Report TR-07-06.
March 2007.
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Multiway Analysis of Epilepsy Tensors. with E. Acar, C. Aykut-Bingol, H. Bingol.
R. Bro. in BIOINFORMATICS 23(13):
i10-i18, 2007.
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Seizure Recognition on
Epilepsy Feature Tensor. with E. Acar, C. Aykut-Bingol, H.
Bingol. R. Bro. in
Proc. of IEEE EMNBC 2007, August
2007.
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Cell-Graph Mining for
Breast Tissue Modeling and Analysis. with
C. Bilgin, C. Demir,
C. Nagi. in Proc. of
IEEE EMBC 2007, August 2007.
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Computational Analysis of
Epileptic Focus Localization. with E. Acar, C. Bingol, H. Bingol.
in Proceedings of The Fourth IASTED International Conference on
Biomedical Engineering - BioMED2006, 15-17 February 2006, Innsbruck,
Austria.
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Learning
the Topological Properties of Brain Tumors. with
C. Gunduz and S. H. Gultekin.
in IEEE/ACM Transactions on Computational
Biology and Bioinformatics Vol2. No. 3, July-September 2005.
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Augmented
Cell-graphs for Automated Cancer Diagnosis. with
C. Demir and S. H. Gultekin.
in BIOINFORMATICS Vol. 21 Suppl. 2 2005 pp
7--12. (Presented in Proc. of ECCB, October 2005).
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Spectral
Analysis of Cell-graphs for Automated Cancer Diagnosis. with C. Demir and S. H. Gultekin. in Proc. of 4th Conference on Modeling
and Simulation in Biology, Medicine and Biomedical Engineering,
Linkoping, Sweden, May 2005.
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The
Cell-Graphs of Cancer. with C. Gunduz and S. H. Gultekin.
in BIOINFORMATICS Vol. 20 Suppl. 2004, pp 145-151 (presented in Proc.
of International Symposium on Molecular Biology ISMB/ECCB, July, 2004).
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