See applicable copyright notices at the bottom of this page.

Journal Publications:

  1. Characterization of Breast Cancer exploiting Integrin-Driven Cell-to-Cell Interaction Networks, B. Oztan, C. Bjornsson, G. Plopper, and B. Yener, (in preparation)

  2. Prediction and Localization of Epileptic Seizures using Graph-Theoretic Analysis of EEG Recordings, B. Oztan and B. Yener, (in preparation)

  3. Prediction of Salivary Gland Branching Morphogenesis by Dynamic Graph-Based Computational Model,  N. Dhulekar, L. Bange, A. Baskaran, D. Yuan, B. Oztan, B. Yener, S. Ray, and M. Larsen, (submitted for review) PLOS One, August 2013

  4. Cell-based Multi-Parametric Model of Cleft Progression during Submandibular Salivary Gland Branching Morphogenesis, S. Ray, N. Dhulekar, D. Yuan, B. Oztan, B. Yener, and M. Larsen, (accepted for publication) PLOS Computational Biology, September 2013 (Download)

  5. Novel image analysis approach quantifies complex structural organization of 3D breast culture acini with a range of metastatic potentials, L. M. Polizzotti*, B. Oztan*, B. Yener, and G. E. Plopper, Journal of Biomedicine and Biotechnology, May 2012 (Download) (*equal contribution)

  6. Nanofiber scaffolds regulate focal adhesion complex formation and salivary gland epithelial cell organization, S. J. Sequeira, D. Soscia, B. Oztan, R. Jean-Gilles, A. Gadre, B. Yener, J. Castracane, and M. Larsen, Biomaterials, April 2012 (Download)

  7. Quantitative metric profiles capture three-dimensional temporospatial architecture to discriminate cellular functional states, L. McKeen-Polizzotti, K. Henderson, B. Oztan, C. C. Bilgin, B. Yener, and G. E. Plopper, BMC Medical Imaging, July 2011 (Download)

  8. Per-separation Clustered-Dot Color Halftone Watermarks: Separation Estimation based on Spatial Frequency Content, B. Oztan and G. Sharma, Journal of Electronic Imaging, October-December 2010 (Download)

  9. Continuous Phase-Modulated Halftones, B. Oztan and G. Sharma, IEEE Transactions on Image Processing, December 2009 (DownloadSupplementary Material (92 MB)

  10. Misregistration Sensitivity in Clustered-Dot Color Halftones, B. Oztan, G. Sharma, and R. P. Loce, Journal of Electronic Imaging, April-June 2008 (Download

Conference Publications:

  1. Global Changes in the Connectome in Autism Spectrum Diseases, C. J. Goch, B. Oztan, B. Stieltjes, R. Henze, J. J. Hering, L. Poustka, H.-P. Meinzer, B. Yener, and K. H. Maier-Hein, in Proc. of Workshop on Mathematical Models for Brain Connectivity in MICCAI, 2013 (Download)

  2. Biologically-Driven Cell-Graphs for Breast Tissue Grading, B. Oztan, K. Shubert, C. Bjornsson, G. Plopper, and B. Yener, in Proc. of IEEE Intl. Symp. on Biomedical Imaging 2013 (Download)

  3. Cellular Dynamics in Salivary Gland Branching Morphogenesis, M. Larsen, S. Ray, D. Yuan, L. Bange, N. Dhulekar, A. Baskaran, B. Oztan, B. Yener, (abstract) American Assoc. of Anatomist Annual Meeting 2013

  4. LIM Kinase-mediated Regulation of Cytoskeletal Dynamics in Mouse Submandibular Salivary Gland Branching Morphogenesis, S. Ray, J. A. Fanti, N. Dhulekar, D. A. Nelson, B. Oztan, B. Yener, and M. Larsen, (abstract) American Society for Cell Biology Annual Meeting 2012

  5. A novel Dynamic Graph-Based Computational Model for Predicting Salivary Gland Branching Morphogenesis, N. Dhulekar, L. Bange, A. Baskaran, D. Yuan, B. Oztan, S. Ray, M. Larsen, and B. Yener, in Proc. of IEEE International Conf. on Bioinformatics and Biomedicine (BIBM) 2012 (Download)

  6. Follicular Lymphoma Grading using Cell-Graphs andMulti-Scale Feature Analysis, B. Oztan, H. Kong, M. Gurcan, and B. Yener, in Proc. SPIE Medical Imaging 2012 (Download)

  7. Classification of Breast Cancer Grades through Quantitative Characterization of Ductal Structure Morphology in Three-Dimensional Cultures, B. Oztan, L. McKeen-Polizzotti, C. C. Bilgin, K. M. Henderson, G. E. Plopper, and B. Yener, in Proc. of ACM Conf. on Bioinformatics, Comp. Biology, and Biomedicine (BCB) 2011 (Download)

  8. Nanoscale Topography of 3D Artificial Scaffolds Regulates Salivary Gland Epithelial Cell Morphology and Focal Adhesion Complex Formation, S. Sequeira, D. Soscia, R. Jean-Gilles, B. Oztan, A. Gadre, B. Yener, J. Castracane, and M. Larsen, (abstract) Salivary Gland Biology & Exocrine Secretion, Gordon Research Conference 2011

  9. High Capacity Image Barcodes using Color Separability, O. Bulan, G. Sharma, and B. Oztan, in Proc. SPIE: Color Imaging XVI: Processing, Hardcopy, and Applications 2011 (Download)

  10. Structure-Function Relationships of TGF-β2 Signaling Pathways Affect the 3D Architecture of Breast Cancer Cells of Varying Metastatic Potentia, L. McKeen-Polizzotti, G. E. Plopper, B. Oztan, and B. Yener, (abstract) American Society for Cell Biology Annual Meeting 2010

  11. Effects of 3D Nanofiber Scaffold Structure on Salivary Gland Epithelial Cell Morphology and Focal Adhesion Complex Formation, S. Sequeira, D. Soscia, R. Jean-Gilles, A. Gadre, B. Oztan, B. Yener, J. Castracane, M. Larsen, (abstract) American Society for Cell Biology Annual Meeting 2010

  12. Multiplexed Clustered-Dot Halftone Watermarks using Direction Phase Modulation and Detection, B. Oztan and G. Sharma, in Proc. of the IEEE Int. Conf. on Image Proc. (ICIP) 2010 (Download)

  13. Clustered-Dot Color Halftone Watermarks using Spatial Frequency and Color Separability, B. Oztan and G. Sharma, in Proc. SPIE Color Imaging XV: Processing, Hardcopy, and Applications 2010 (Download)

  14. Processing of Degraded Documents for Long-Term Archival Using Waferfiche Technology, B. Oztan, G. Sharma, A. Pasupuleti, P. R. Mukund, in Proc. IS&T Archiving Conference 2009 (Download)

  15. Clustered-Dot Color Halftone Watermarks, B. Oztan and G. Sharma, in Proc. IS&T/SID 16th Color Imaging Conference: Color Science and Engineering Systems, Technologies, Application 2008 (Download)

  16. Data Embedding in Hardcopy Images Via Halftone-Dot Orientation Modulation, O. Bulan, V. Monga, G. Sharma, and B. Oztan, in Proc. SPIE: Security, Forensics, Steganography, and Watermarking of Multimedia Contents X 2008 (Download)

  17. Conditions for Color Misregistration Sensitivity in Clustered-Dot Halftones, B. Oztan, G. Sharma and R. P. Loce, in Proc. of the IEEE Int. Conf. on Image Proc. (ICIP) 2007 (Download)

  18. Reduction of Artifacts from JPEG Compressed Document Images, B. Oztan, A. Malik, Z. Fan and R. Eschbach, in Proc. SPIE: Color Imaging XII: Processing, Hardcopy, and Applications 2007 (Download)

  19. Self-Modulated Halftones, B. Oztan and G. Sharma, in Proc. of the IEEE International Conference on Image Processing (ICIP) 2006 (Download)

  20. Continuous Phase Modulated Halftones and Their Application to Halftone Data Embedding, B. Oztan and G. Sharma, in Proc. of the IEEE International Conference on Acoustics, Speech, and Signal Proc. (ICASSP) 2006 (Download) (Demo - Requires PowerPoint) (Student Paper Contest Winner in Image and Multidimensional Signal Processing Category)

  21. Analysis of Misregistration Induced Color Shifts in the Superposition of Periodic Screens, B. Oztan, G. Sharma and R. P. Loce, in Proc. SPIE: Color Imaging XI: Processing, Hardcopy, and Applications 2006 (Download)

  22. Quantitative Evaluation of Misregistration induced Color Shifts in Color Halftones, B. Oztan, G. Sharma and R. P. Loce, in Proc. SPIE: Color Imaging X: Processing, Hardcopy, and Applications 2005 (Download)

Seminars and Workshop Presentations:

  1. Automated Grading of Mammary Ductal Carcinoma in 3D Cultures exploiting Ductal Structure Morphology, RPI-NSF Workshop on Multiscale Modeling of Complex Data, Troy, NY, 12 Sept. 2011.

  2. Multiplexed Clustered-Dot Halftone Watermarks: Methodology and Applications, invited seminar at Electrical, Computer, and Systems Engineering Department, Rensselaer Polytechnic Institute, Troy, NY, 28 April 2010

  3. Continuous Phase-Modulated Halftones: Methodology and Applications, invited seminar at Xerox Research Center Webster, Webster, NY, 18 Sept. 2009

  4. Restoration of Degraded Documents for Long-Term Archival using WaferficheTM Technology, poster presented at CEIS University Technology Showcase Event, Rochester, NY, 12 Feb. 2009

  5. Clustered-Dot Periodic Halftones: Modeling, Modulation, and Applications, invited seminar at Sharp Labs, Camas, WA, 12 Nov 2008

  6. Exploiting Spatial Frequency Separability for Clustered-Dot Color Halftone Watermarking, poster presented at Cyber Security Awareness Week (CSAW) 2008, Brooklyn, NY, 14 Oct 2008

  7. Exploiting Spatial Frequency Separability for Clustered-Dot Color Halftone Watermarking, presented at IEEE Western New York Image Processing Workshop 2008, Rochester, NY, 26 Sep 2008

  8. Halftone Watermarking Using Continuous Phase Modulated Halftones, poster presented at Cyber Security Awareness Week (CSAW) 2007, Brooklyn, NY, 4 Dec 2007

  9. Conditions for Color Misregistration Insensitivity in Clustered-Dot Halftones, presented at  IEEE Western New York Image Processing Workshop 2007, Rochester, NY, 28 Sep 2007

  10. Continuous Phase Modulated Halftones, presented at  IEEE Western New York Image Processing Workshop 2006, Rochester, NY, 29 Sep 2006

  11. Continuous Phase Modulated Halftones and Their Application to Halftone Data Embedding, invited seminar at Department of Electrical and Electronics Engineering, Koc University, Istanbul, Turkey, 30 May 2006

Patents:

  1. US Patent # 7532767, "Removing ringing and blocking artifacts from JPEG compressed document images", issued May 12 2009 to Xerox Corp., Inventors: B. Oztan, A. Malik, Z. Fan, and R. Eschbach 

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