To compile:
make

To run:
./align [alpha] [graph1] [graph2] [counts1] [counts2] [g/t]

where alpha is [0.0-1.0]
graph1 is smaller graph
graph2 is graph graph1 is being aligned to
counts1 and counts2 are the files containing per vertex counts

g signifies graphlets and t signifies treelets
the graphlet count files all end in *.ndump2
the treelet count files all end in *.count.#


To test the random approach, change the #define RANDOM 0 in align.cpp to #define RANDOM 1. When running, you can use either g or t with the appropriate graphlet or treelet counts. They need to be supplied since they will be read but ignored.
