Publications
I have over 400 peer-reviewed publications. I am including links to external publication collections, my books and proceedings and a few recent journal and related publications. For a more complete listing see my CV.
Books
| |
||
Also see:
Google Scholar
http://scholar.google.com/scholar?hl=en&q=deborah+mcguinness
DBLP
http://www.informatik.uni-trier.de/~ley/pers/hd/m/McGuinness:Deborah_L=.html
and http://dblp.org/search/#query=deborah mcguinness
RPI Tetherless World Constellation McGuinness publications partial listing
http://tw.rpi.edu/web/person/Deborah_L_McGuinness/Publications
Stanford Knowledge Systems Laboratory publications McGuinness publications partial listing:
http://www.ksl.stanford.edu/abstracts_by_author/McGuinness,D..papers.html
ResearchGate
https://www.researchgate.net/profile/Deborah_Mcguinness
Academia.edu
https://rpi.academia.edu/DeborahLMcGuinness
Leslie Sikos, Oshani Seneviratne, Deborah L. McGuinness. Provenance in Data Science: From Data Models to Context-Aware Knowledge Graphs. Springer, 2021. ISBN 978-3-030-67680-3 DOI: 10.1007/978-3-030-67681-0 https://www.springer.com/gp/book/9783030676803
Elisa F. Kendall and Deborah L. McGuinness. Ontology Engineering. Synthesis Lectures on the Semantic Web: Theory and Technology. Morgan and Claypool Publishers. 2019. ISBN: 9781681733081. https://www.amazon.com/Ontology-Engineering-Elisa-F-Kendall-ebook/dp/B07T189GZZ
Franz Baader, Diego Calvanese, Deborah L. McGuinness, Daniele Nardi, and Peter F. Patel-Schneider, editors, The Description Logic Handbook: Theory, Implementation and Applications, Cambridge University Press, 2003. Second edition, 2006.
Isabel Cruz, Stefan Decker, Jerome Euzenat, and Deborah L. McGuinness, editors. The Emerging Semantic Web. IOS Press, 2002. (Available from http://www.iospress.nl/site/html/boek-1381825766.html.)
Joanne S. Luciano, Grant P. Cumming. Eva Kahana, Mark D. Wilkinson, Elizabeth H Brooks, Dominick DiFranzo, Holly Jarman, Deborah L. McGuinness, Margaret Levine, Cathy Pope. Health Web Science. Now Publishers Inc. Hanover, MA, USA , 2014.
Conference Proceedings
Peter Fox, Deborah L. McGuinness, Lindsay Poirer, Katharina Kinder-Kurlanda, Paolo Boldi. Proceedings of the ACM International Web Science Conference. Troy, NY, 2017. June 25 - 28, 2017. ACM 2017, ISBN 978-1-4503-4896-6
Deborah McGuinness, James Michaelis, and Luc Moreau. Provenance and Annotation of Data and Process. Springer. 2012. http://www.springerlink.com/content/978-3-642-17818-4#section=824603&page=1
Deborah McGuinness and George Ferguson, Program Co-chairs. Proceedings of the Nineteenth National Conference on Artificial Intelligence (AAAI-04). AAAI Press, San Jose, California, July, 2004. Available from http://www.aaai.org/Press/Proceedings/AAAI/2004/aaai04.html .
Dieter Fensel, Fausto Guinchiglia, Deborah McGuinness, and Mary-Anne Williams, editors. Knowledge Representation 2002: Proc. of the 8th International Conference (KR '02). Morgan Kaufmann Publishers, Toulouse, France, May 2002. Available from http://www.mkp.com/books_catalog/catalog.asp?ISBN=1-55860-847-8 .
Selected In Preparation:
Santos, H., Mulvehill, A, Erickson, J, McCusker, J, Gordon, M, Xie, O, , Stouffer, S, Capraro, G, , Pidwerbetsky, A, Burgess, J, Berlinsky, A, Turck, K, Ashdown, J, and McGuinness, D. A Semantic Framework for Enabling Radio
Spectrum Policy Management and Evaluation. Submitted, approved for release 88ABW-2020-1535)
Selected Recent Journal Publications
Sabbir M Rashid, James P McCusker, Paulo Pinheiro, Marcello P Bax, Henrique Santos, Jeanette A Stingone, Amar K Das, Deborah L McGuinness. The Semantic Data Dictionary–An Approach for Describing and Annotating Data. Data Intelligence, MIT Press pp. 443-486. April 2021 DOI: https://doi.org/10.1162/dint_a_00058
Sola S. Shirai, Oshani Seneviratne, Minor E. Gordon, Ching-Hua Chen, Deborah L. McGuinness; Ingredient Substitutions Using a Knowledge Graph of Food. Frontiers in Artificial Intelligence, section AI in Food, Agriculture and Water. doi: 10.3389/frai.2020.621766
Anne Thessen, Ramona Walls, Lars Vogt, Jessica Singer, Robert Warren, Pier Luigi Butt Pier Luigi Buttigieg,James P. Balhoff, Christopher J. Mungall, Deborah L. McGuinness, Brian J. Stucky, Matthew J. Yoder, Melissa A. Haendel. Transforming the study of organisms: Phenomic data models and knowledge bases. PLOS Computational Biology. Nov, 2020.16(11). https://doi.org/10.1371/journal.pcbi.1008376
L Catherine Brinson, Michael Deagen, Wei Chen, James McCusker, Deborah L McGuinness, Linda S Schadler, Marc Palmeri, Umar Ghumman, Anqi Lin, Bingyin Hu. Polymer Nanocomposite Data: Curation, Frameworks, Access, and Potential for Discovery and Design. American Chemical Society (ACS) Macro Letters,Volume 9, Issue 8, pp 1086-1094. July 2020. Publication. DOI: https://doi.org/10.1021/acsmacrolett.0c00264
J Stingone, P Pinheiro, J Meola, J McCusker, S Bengoa, P Kovatch, D McGuinness, S Teitelbaum. The CHEAR Data Repository: Facilitating children’s environmental health and exposome research through data harmonization, pooling and accessibility. Environmental Epidemiology 3, 382, 2019. Publication.
T Vargason, RE Frye, DL McGuinness, J Hahn. Clustering of co‐occurring conditions in autism spectrum disorder during early childhood: A retrospective analysis of medical claims data. Autism Research, May 2019. https://doi.org/10.1002/aur.2128 Publication.
Kristin P Bennett, Elisabeth M Brown, Hannah De los Santos, Matthew Poegel, Thomas R Kiehl, Evan W Patton, Spencer Norris, Sally Temple, John Erickson, Deborah L McGuinness, Nathan C Boles. Identifying Windows of susceptibility by temporal Gene Analysis. Scientific reports. Volume 9, Issue 1. Feb 2019. Publication.
Troy Vargason, Deborah L. McGuinness, and Juergen Hahn. Gastrointestinal Symptoms and Oral Antibiotic Use in Children with Autism Spectrum Disorder: Retrospective Analysis of a Privately Insured U.S. Population". Journal of Autism and Developmental Disorders. 2/2019. DOI: 10.1007/s10803-018-3743-2.
He Zhao, Yixing Wang, Anqi Lin, Bingyin Hu, Rui Yan, James McCusker, Wei Chen, Deborah L. McGuinness, Linda Schadler, L. Catherine Brinson, NanoMine Schema: A Data Representation for Polymer Nanocomposites, APL Materials Vol 6 No. 11 (2018), pp. 111108-111108 https://doi.org/10.1063/1.5046839.
T. Vargason, U. Kruger, D.L. McGuinness, J.B. Adams, E. Geis, E. Gehn, D. Coleman, and J. Hahn. Investigating Plasma Amino Acids for Differentiating Individuals with Autism Spectrum Disorder and Typically Developing Peers. Research in Autism Spectrum Disorders, Volume 50, June 2018. Pp 60-72. PubMed ID 29682004 [Publication, Abstract]
Troy Vargason, Daniel P. Howsmon, Deborah L. McGuinness. and Juergen Hahn. On the Use of Multivariate Methods for Analysis of Data from Biological Networks. Processes July 2017, 5(3), 36; doi:10.3390/pr5030036
Jeanette A. Stingone, Nancy Mervish, Patricia Kovatch, Deborah L. McGuinness, Chris Gennings, and Susan L. Teitelbaum. Big and Disparate Data: Considerations for Pediatric Consortia. Current Opinions in Pediatrics Journal. 29(2):231-239, April 2017. doi: 10.1097/MOP.0000000000000467. PMID: 28134706 https://www.ncbi.nlm.nih.gov/pubmed/28134706
James P. McCusker, Michel Dumontier, Rui Yan, Sylvia He, Jonathan S. Dordick, Deborah L. McGuinness. Finding Melanoma Drugs through a Probabilistic Knowledge Graph. PeerJ Computer Science 3: e106(2017).
Zheng JG, Howsmon D, Zhang B, Hahn J, McGuinness D, Hendler J, Ji H. Entity linking for biomedical literature. BMC Med Inform Decis Mak. 2015;15 Suppl 1:S4. doi: 10.1186/1472-6947-15-S1-S4. Epub 2015 May 20.PMID: 26045232
Patton, EW, Seyed P, Wang P, Fu L, McGuinness DL, Dein FJ, Bristol RS. (2014). SemantEco: A Semantically-powered Modular Architecture for Integrating Distributed Environmental and Ecological Data. Future Generation Computing Systems 36, pp. 430–440.
Selected Recent REFEREED CONFERENCE PUBLICATIONS and BOOK ARTICLES
Shruthi Chari , Oshani Seneviratne , Daniel M. Gruen , Morgan A. Foreman , Amar K. Das, Deborah L. McGuinness. Explanation Ontology: A Model of Explanations for User-Centered AI; Resource Track,19th International Semantic Web Conference. November, 2020
James McCusker, Neha Keshan, Sabbir Rashid, Michael Deagen, Cate Brinson, Deborah L. McGuinness. Nanomine: A Knowledge Graph for Nanocomposite Materials Science. Resource Track,19th International Semantic Web Conference. November, 2020
Shruthi Chari , Oshani Seneviratne , Daniel M. Gruen , Morgan A. Foreman , Amar K. Das, Deborah L. McGuinness. Explanation Ontology in Action: A Clinical Use-Case Posters and Demo Track,19th International Semantic Web Conference. November, 2020
Sola Shirai, Oshani Seneviratne, Minor Gordon, Ching-Hua Chen, Deborah McGuinness. Semantics-Driven Ingredient Substitution in the FoodKG;. Posters and Demo Track,19th International Semantic Web Conference. November, 2020.
Daniel Kazenoff, Oshani Seneviratne, Deborah L. McGuinness: Semantic Graph Analysis to Combat Cryptocurrency Misinformation on the Web. Advances in Semantics and Linked Data (ASLD) 2020: 168-176 http://ceur-ws.org/Vol-2722/
Matthew Johnson, Meenu Ravi, Paulo Pinheiro, Jeanette A. Stingone, Deborah L. McGuinness. A Semi-Automated Approach to Data Harmonization Across Environmental Health Studies. 32nd Annual Conference of the International Society for Environmental Epidemiology (ISEE). August, 2020.
Jay D. S. Franklin, Shruthi Chari, Morgan A. Foreman, Oshani Seneviratne, Daniel M. Gruen, James P. McCusker , Amar K. Das, Deborah L. McGuinness. Knowledge Extraction of Cohort Characteristics in Research Publications. American Medical Informatics Association (AMIA) Annual Conference 2020 (Regular paper)
Shruthi Chari, Daniel M. Gruen, Oshani Seneviratne, Deborah L. McGuinness. Foundations of Explainable Knowledge-Enabled Systems. In: Ilaria Tiddi, Freddy Lecue, Pascal Hitzler (eds.), Knowledge Graphs for eXplainable AI -- Foundations, Applications and Challenges. Studies on the Semantic Web, IOS Press, Amsterdam, 2020
Shruthi Chari, Daniel M. Gruen, Oshani Seneviratne, Deborah L. McGuinness. Directions for Explainable Knowledge-Enabled Systems,. In: Ilaria Tiddi, Freddy Lecue, Pascal Hitzler (eds.), Knowledge Graphs for eXplainable AI -- Foundations, Applications and Challenges. Studies on the Semantic Web, IOS Press, Amsterdam, 2020
Matthew Johnson, John Angel, Deborah McGuinness. Towards a Face Recognition Model Analyzer. IEEE 14th International Conference on Semantic Computing (ICSC) February 2020.Pages 234-237. Publication
Shruthi Chari, Miao Qi, Nkcheniyere N. Agu, Oshani Seneviratne, James P. McCusker, Kristin P. Bennett, Amar K. Das and Deborah L. McGuinness. Making Study Populations Visible through Knowledge Graphs. In Proceedings of the International Semantic Web Conference, Auckland, NZ, 2019.
Shruthi Chari, Miao Qi, Nkechinyere N. Agu, Oshani Seneviratne, James P. McCusker, Kristin P. Bennett, Amar K. Das, Deborah L. McGuinness: Ontology-enabled Analysis of Study Populations. International Semantic Web Conference Posters and Demos, Auckland, NZ, October, 2019.
Steven Haussmann, Oshani Seneviratne, Yu Chen, Yarden Ne’eman, James Codella, Ching-Hua Chen, Deborah L. McGuinness and Mohammed J. Zaki. FoodKG: A Semantics-Driven Knowledge Graph for Food Recommendation. In Proceedings of the International Semantic Web Conference, Auckland, NZ 2019.
Steven Haussmann, Yu Chen, Oshani Seneviratne, Nidhi Rastogi, James Codella, Ching-Hua Chen, Deborah McGuinness, Mohammed Zaki: FoodKG Enabled Questions and Answers Application. International Semantic Web Conference Posters and Demos, Auckland, NZ, October, 2019.
Stingone JA, Pinheiro P, Meola J, McCusker JP, Bengoa S, Kovatch P, McGuinness DL, Teitelbaum SL. The CHEAR Data Repository: Facilitating children’s environmental health and exposome research through data harmonization, pooling and accessibility. 2019 Annual Meeting for the International Society of Environmental Epidemiology Utrecht, NL
Alexander New, Shruthi Chari, Miao Qi, Sabbir M. Rashid, John S. Erickson, Deborah L. McGuinness, Kristin P. Bennett. Semantically-targeted analytics for reproducible scientific discovery. Proceedings of the Conference on Artificial Intelligence for Data Discovery and Reuse, AIDR 2019, Pittsburgh, PA, USA, May 13-15, 2019
Oshani Seneviratne, Sabbir Rashid, Shruthi Chari, Jim McCusker, Kristin Bennett, James Hendler and Deborah McGuinness. Knowledge Integration for Disease Characterization: A Breast Cancer Example. In Proceedings of the International Semantic Web Conference, Monterey, CA, 2018.
James McCusker, Sabbir Rashid, Nkechinyere Agu, Kristin Bennett and Deborah McGuinness. The Whyis Knowledge Graph Framework in Action. In Proceedings of the International Semantic Web Conference, Monterey, CA, 2018.
Paulo Pinheiro, Henrique Santos, Zhicheng Liang, Yue Liu, Sabbir Rashid, Deborah McGuinness and Marcello Bax. HADatAc: A Framework for Scientific Data Integration using Ontologies. In Proceedings of the International Semantic Web Conference, Monterey, CA, 2018.
Oshani Seneviratne, Sabbir Rashid, Shruthi Chari, Jim McCusker, Kristin Bennett, James Hendler and Deborah McGuinness. Ontology-enabled Breast Cancer Characterization. In Proceedings of the International Semantic Web Conference, Monterey, CA, 2018.
Yue Liu, Tongtao Zhang, Zhicheng Liang, Heng Ji, Deborah McGuinness. Seq2RDF: An end-to-end application for deriving Triples from Natural Language Text. In Proceedings of the International Semantic Web Conference, Monterey, CA, 2018.
Paulo Pinheiro, Marcello Peixoto Bax, Henrique Santos, Sabbir M. Rashid, Zhicheng Liang, Yue Liu, Yarden Ne'eman, James P. McCusker, Deborah L. McGuinness: Annotating Diverse Scientific Data With HAScO. ONTOBRAS 2018: pp. 80-91
Selected Standards Documents
Tim Lebo, Satya Sahoo, and Deborah L. McGuinness. PROV-O: The PROV Ontology. World Wide Web Consortium (W3C) Recommendation. April 30, 2013. Available from http://www.w3.org/TR/prov-o/.
Jie Bao, Elisa F. Kendall, Deborah L. McGuinness, Peter F. Patel-Schneider, eds. OWL 2 Web Ontology Language: Quick Reference Guide (Second Edition). W3C Recommendation, 11 December 2012, http://www.w3.org/TR/2012/REC-owl2-quick-reference-20121211/. Latest version available at http://www.w3.org/TR/owl2-quick-reference/.
Michael K. Smith, Chris Welty, and Deborah L. McGuinness. OWL Web Ontology Language Guide. World Wide Web Consortium (W3C) Recommendation. February 10, 2004. Available from http://www.w3.org/TR/owl-guide/
Deborah L. McGuinness and Frank van Harmelen. OWL Web Ontology Language Overview. World Wide Web Consortium (W3C) Recommendation. February 10, 2004. Available fromhttp://www.w3.org/TR/owl-features/ .
Michael K. Smith, Chris Welty, and Deborah L. McGuinness. OWL Web Ontology Language Guide. World Wide Web Consortium (W3C) Recommendation. February 10, 2004. Available from http://www.w3.org/TR/owl-guide/ .
Mike Dean, Guus Schreiber, Frank van Harmelen, James Hendler, Ian Horrocks, Deborah L. McGuinness, Peter F. Patel-Schneider, and Lynn Andrea Stein. OWL Web Ontology Language Reference. World Wide Web Consortium (W3C) Recommendation. February 10, 2004. Available from http://www.w3.org/TR/owl-ref/ .
Dan Connolly, Frank van Harmelen, Ian Horrocks, Deborah L. McGuinness, Peter F. Patel-Schneider, and Lynn Andrea Stein. DAML+OIL (March 2001) Reference Description. World Wide Web Committee (W3C) Note 18 December 2001.
Richard Fikes and Deborah L. McGuinness. An Axiomatic Semantics for RDF, RDF-S, and DAML+OIL (March 2001). World Wide Web Committee (W3C) Note 18 December 2001.
Dan Connolly, Frank van Harmelen, Ian Horrocks, Deborah L. McGuinness, Peter F. Patel-Schneider, and Lynn Andrea Stein. Annotated DAML+OIL Ontology Markup . World Wide Web Committee (W3C) Note 18 December 2001.
Thesis
Deborah L. McGuinness. Explaining reasoning in description logics (1996) Rutgers University Thesis. Technical report lcsr-tr-277 https://rucore.libraries.rutgers.edu/rutgers-lib/59605/